com.wcohen.ss
Class SmithWaterman

java.lang.Object
  com.wcohen.ss.AbstractStringDistance
      com.wcohen.ss.SmithWaterman

All Implemented Interfaces:

StringDistance, StringDistanceLearner

public class SmithWaterman
extends AbstractStringDistance

Smith-Waterman string distance, following Durban et al. Sec 2.3.

Constructor Summary

SmithWaterman()

SmithWaterman(CharMatchScore charMatchScore, double gapCost)

Method Summary

java.lang.String	explainScore(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.
static void	main(java.lang.String[] argv)
double	score(StringWrapper s, StringWrapper t) This method needs to be implemented by subclasses.
java.lang.String	toString()

Methods inherited from class com.wcohen.ss.AbstractStringDistance

addExample, doMain, explainScore, getDistance, hasNextQuery, nextQuery, prepare, prepare, prepare, score, setDistanceInstancePool, setStringWrapperPool

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SmithWaterman

public SmithWaterman()

SmithWaterman

public SmithWaterman(CharMatchScore charMatchScore,
                     double gapCost)

Method Detail

score

public double score(StringWrapper s,
                    StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

score in interface StringDistance

Specified by:

score in class AbstractStringDistance

explainScore

public java.lang.String explainScore(StringWrapper s,
                                     StringWrapper t)

Description copied from class: AbstractStringDistance

This method needs to be implemented by subclasses.

Specified by:

explainScore in interface StringDistance

Specified by:

explainScore in class AbstractStringDistance

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

main

public static void main(java.lang.String[] argv)