com.wcohen.ss
Class AffineGap.MatrixTrio.InsertSMatrix

java.lang.Object
  com.wcohen.ss.MemoMatrix
      com.wcohen.ss.AffineGap.MatrixTrio.InsertSMatrix

Enclosing class:

AffineGap.MatrixTrio

protected class AffineGap.MatrixTrio.InsertSMatrix
extends MemoMatrix

Field Summary

Fields inherited from class com.wcohen.ss.MemoMatrix

cellFormat, printNegativeValues, s, t

Constructor Summary

AffineGap.MatrixTrio.InsertSMatrix(StringWrapper s, StringWrapper t)

Method Summary

double

compute(int i, int j) Compute a new element of the matrix.

Methods inherited from class com.wcohen.ss.MemoMatrix

max3, max4, sAt, tAt, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AffineGap.MatrixTrio.InsertSMatrix

public AffineGap.MatrixTrio.InsertSMatrix(StringWrapper s,
                                          StringWrapper t)

Method Detail

compute

public double compute(int i,
                      int j)

Description copied from class: MemoMatrix

Compute a new element of the matrix. This should be defined in terms of calls to get(i,j).